So I've got both CLs set to receive clock from the first RIO box (preferred master), no secondary clock source yet. I've also managed to patch both CLs via Dante Controller, and my laptop I/O via Dante Virtual Soundcard. I may learn to like this ….
I've discovered that re-naming devices can cause some pain, I'll tackle it on another day.
I'm still puzzled by the following small sample of log entries:
1374619012521 Information "" "Clock master change on Primary: Device Y001-Yamaha-Rio3224-D no longer clock master"
1374619012522 Information "" "Clock master change on Secondary: Device Y001-Yamaha-Rio3224-D no longer clock master"
1374619012529 Information "" "Device 001DC1062208 (device name not known) is no longer a grandmaster"
1374619012699 Warning "" "Device 001DC1062208 (device name not known) is now a grandmaster"
1374619012756 Error "" "Clock master change on Primary: Device Y001-Yamaha-Rio3224-D is now clock master"
1374619012757 Error "" "Clock master change on Secondary: Device Y001-Yamaha-Rio3224-D is now clock master"
1374619022756 Information "Y001-Yamaha-Rio3224-D" "Timed out 3 times awaiting a reply to message 'HaRemote' from Y001-Yamaha-Rio3224-D, giving up."
1374619022757 Information "Y002-Yamaha-Rio3224-D" "Timed out 3 times awaiting a reply to message 'HaRemote' from Y002-Yamaha-Rio3224-D, giving up."
1374619022953 Information "Y002-Yamaha-CL5-066b20" "Timed out 3 times awaiting a reply to message 'HaRemote' from Y002-Yamaha-CL5-066b20, giving up."
1374619023007 Information "Y001-Yamaha-CL5-0618da" "Timed out 3 times awaiting a reply to message 'HaRemote' from Y001-Yamaha-CL5-0618da, giving up."
1374619624767 Information "" "Device 001DC1062208 (device name not known) is no longer a grandmaster"
I've still got to down-grade firmware, I assume the bits about the "HaRemote" are indicative of the bugs there. The entries for "Device 001DC1062208" I don't have a clue about. I'm still working on the time stamps, too (re: 1374619624767).
Thanks to all whom have responded.