The amp volume. In both cases, the guitar volume and tone are full up.
In the pedalboard, besides the TU2 tuner, everything in the signal path was on true bypass.
On both Normal and Vibrato channels, plugged into input 1 to test. Tried it on the second jacks; pad was there on the vibrato channel 2, harder to tell on the normal channel 2.
Now it gets weirder.
Carried it downstairs, weighed it on a scale (60.5 lbs, so it's good exercise) and into the guitar to the shop. Brought the pedalboard, all the same cables and power cable and plugged it in. Worked fine. both volumes worked as they should, both inputs 1 and 2.
Could I have a power issue in my house? House was built in 1984, have not done any electrical service work besides adding GFCI outlets in kitchen and bathrooms.
Other culprit I'm thinking is an intermittent short/cold solder. When I brought the amp home, both channels worked as expected.
Thanks for the help.